All the publications that will be published during SEARMET project will be uploaded to the digital archive of Estonian University of Life Sciences Library (DSpace). More information: https://dspace.emu.ee/xmlui/?locale-attribute=en

The list of publications will be also available on SEARMET website.

2017

1. Ho Duy Binh; Maasalu, K; Dung, VC; Ngoc, CT; Hung, TT; Nam, TV; Nhan, LN; Prans, E; Reimann, E; Zhytnik, L; Kõks, S; Märtson, A (2017). The clinical features of osteogenesis imperfecta in Vietnam. International Orthopaedics, 41 (1, Int Orthop. 2016 Nov 2), 21−29.10.1007/s00264-016-3315-z.

2. Karis, P.; Jaakson, H.; Ling, K.; Ilves-Luht, A.; Samarütel, J.; Valdmann, A.; Reimann, E.; Pärn, P.; Bruckmaier, R.M.; Gross, J.J.; Kaart, T.; Ots, M. (2017). Insuliini retseptori ja glükoosi transporter 4 avaldumine eesti holsteini tõugu lehmade rasvkoes sõltuvalt kinnisperioodi toitumushindest. Terve loom ja tervislik toit: "Terve loom ja tervislik toit 2017", 1.-2. märts, Tartu. Toim. Kass, Marko. Tartu: Ecoprint, 126−128.

3. Kõks, Sulev; Keermann, Maris; Reimann, Ene; Prans, Ele; Abram, Kristi; Silm, Helgi; Kõks, Gea; Kingo, Kulli (2017). Psoriasis-Specific RNA Isoforms Identified by RNA-Seq Analysis of 173,446 Transcripts. Frontiers in Medicine, 3, 46.10.3389/fmed.2016.00046.

4. Maasalu, Katre; Laius, Ott; Zhytnik, Lidiia; Kõks, Sulev; Prans, Ele; Reimann, Ene; Märtson, Aare (2017). Transcriptional landscape analysis identifies differently expressed genes involved in follicle-stimulating hormone induced postmenopausal osteoporosis. Experimental Biology and Medicine, 242 (2), 203−2013.10.1177/1535370216679899.

5. Mark, Elina; Pärn, Pille; Kurõkin, Jevgeni; Kavak, Ants; Reilent, Andres; Jaakma, Ülle (2017). Uued tuuled Eesti tõuaretuse maastikul - farmipõhine veise in vitro embrüote tootmine. Marko Kass (Toim.). Konverentsi „Terve loom ja tervislik toit 2017“ artiklite kogumik. (106−109). Tartu: Eesti Maaülikool.

6. Mark, Elina (2017). Kumb oli enne - kas muna või kana? Triin Olvet (Toim.). Teadus kolme minutiga (140−143). Argo Kirjastus.

7. Planken A, Kurvits L, Reimann E, Kadastik-Eerme L, Kingo K, Kõks S, Taba P. (2017). Looking beyond the brain to improve the pathogenic understanding of Parkinson’s disease: implications of whole transcriptome profiling of skin. BMC Neurology, 17 (6), 6−6.10.1186/s12883-016-0784-z.

8. Sillaste, Gerly; Kaplinski, Lauris; Meier, Riho; Jaakma, Ülle; Eriste, Elo; Salumets, Andres (2017). A novel hypothesis for histone-to-protamine transition in Bos taurus spermatozoa. Reproduction (Cambridge, England), 153 (3), 241−251.10.1530/REP-16-0441.

9. Valdmann, M; Valdmann, A. (2017). Lehma emakast tsütoloogiliste proovide võtmise instrumendi väljatöötamine ja kasutamine. Terve loom ja tervislik toit: "Terve loom ja tervislik toit 2017", 1.-2. märts, 2017. Toim. Kass, Marko. Tartu: Ecoprint, 99−103.

 

2016

1. Binh Ho Duy; Zhytnik, Lidiia; Maasalu, Katre; Kandla, Ivo; Prans, Ele; Reimann, Ene; Martson, Aare; Koks, Sulev (2016). Mutation analysis of the COL1A1 and COL1A2 genes in Vietnamese patients with osteogenesis imperfecta. Human Genomics, 10 (27), 1−7.10.1186/s40246-016-0083-1.

2. Ehrlich, Marite, Marilin Ivask, Atso Raasmaja & Sulev Koks (2016). Analysis of metabolic effects of menthol on WFS1-deficient mice. Physiol Rep, 4 (1), 2016, e12660. doi:10.14814/phy2.12660.

3. Ivask Marilin, Alison Hugill, Sulev Kõks (2016). RNA-sequencing of WFS1-deficient pancreatic islets. Physiol Rep, 4 (7), 2016, e12750. doi:10.14814/phy2.12750.

4. Jaakson, Hanno; Karis, Priit; Ling, Katri; Samarütel, Jaak; Ilves-Luht, Aire; Reimann, Ene; Pärn, Pille; Bruckmaier, Rupert; Gross, Jospef; Ots, Meelis (2016). Adipose tissue INSR and GLUT4 expression with reference to body condition score in Holstein cows. 16th International Conference on Production Diseases in Farm Animals – Book of abstracts: 16th International Conference on Production Diseases in Farm Animals, Wageningen, the Netherlands 20-23 June 2016. Wageningen Academic Publishers, 108−108.10.3920/978-90-8686-831-5.

5. Jeremejeva, J.; Orro, T.; Valdmann, A.; Aunapuu, M.; Blank, I.; Arend, A.; Kask, K. (2016). Early versus late postpartum treatment of clinical endometritis in dairy cows using a combination of systemic administrations of ceftiofur with prostaglandin F2α. Veterinary Medicine and Zootechnics, 74, 9−13.

6. Koks, Sulev; Reimann, Ene; Maasalu, Katre; Koks, Gea; Xuan, Dung Ho; Prans, Ele; Martson, Aare (2016). Whole transcriptome analysis of osteosarcoma. The FASEB Journal, 30 (1), 515.6−515.6.

7. Krjutškov, Kaarel; Koel, Mariann; Roost, Anne Mari; Katayama, Shintaro; Einarsdottir, Elisabet; Jouhilahti, Eeva-Mari; Söderhäll, Cilla; Jaakma, Ülle; Plaas, Mario; Vesterlund, Liselotte; Lohi, Hannes; Salumets, Andres; Kere, Juha (2016). Globin mRNA reduction for whole-blood transcriptome sequencing. Scientific reports, 6, 31584−31584.10.1038/srep31584.

8. Kurykin, J.; Hallap, T.; Jalakas, M.; Padrik, P.; Kaart, T.; Johannisson, A.; Jaakma, Ü. (2016). Effect of insemination-related factors on pregnancy rate using sexed semen in Holstein heifers. Czech Journal of Animal Science, 61 (12), 568−577.10.17221/12/2016-CJAS.

9. Mark, Elina; Kurõkin, Jevgeni; Kavak, Ants; Jaakma, Ülle (2016). Munarakkude saamine elusloomalt ja veise embrüote kehaväline tootmine. Marko Kass (Toim.). Konverentsi „Terve loom ja tervislik toit 2016“ artiklite kogumik (56−60). Tartu: Eesti Maaülikool.

10. Reimann, E; Kingo, K; Karelson, M; Reemann, P; Vasar, E; Silm, H; Kõks, S (2016). Whole Transcriptome Analysis (RNA Sequencing) of Peripheral Blood Mononuclear Cells of Vitiligo Patients. Dermatopathology (Basel, Switzerland), 1 (1), 11−23.10.1159/000357402.

11. Tiirats, Airi; Viltrop, Triin; Nõukas, Margit; Reimann, Ene; Salumets, Andres; Kõks, Sulev (2016). C14orf132 gene is possibly related to extremely low birth weight. BMC genetics, 17 (1), 132−132.

12. Traks, Tanel; Karelson, Maire; Reimann, Ene; Rätsep, Ranno; Silm, Helgi; Vasar, Eero; Kõks, Sulev; Kingo, Külli (2016). Association analysis of class II cytokine and receptor genes in vitiligo patients. Human Immunology, 77 (5), 375−381.10.1016/j.humimm.2015.09.050.

13. Waldmann, A.; Raud, A. (2016). Comparison of a lateral flow milk progesterone test with enzyme immunoassay as an aid for reproductive status determination in cows. Veterinary Record, xx.10.1136/vr.103605.

 

 

2017

1. Aldana, B.I., Zhang, Y., Lihme, M.F., Bak, L.K., Nielsen, J.E., Holst, B., Hyttel, P., Freude, K.K. and Waagepetersen, H. (2017): Characterization of energy and neurotransmitter metabolism in cortical glutamatergic neurons derived from human induced pluripotent stem cells: A novel approach to study metabolism in human neurons. Neurochem Int. doi: 10.1016/j.neuint.2017.02.010. [Epub ahead of print]

2. Hall, V. J., Secher, J. O. B., Liu, Y., Petkov, S. G., Li, D., Schmidt, M., Callesen, H., Freude, K. and Hyttel, P. (2017):Evaluation of porcine stem cell competence for somatic cell nuclear transfer and production of cloned animals.  Anim. Reprod. Sci. 178:40-49.

3. Konstantinidi R., Thurston L. M., Akmal Jamaludin N., Hunt S. & Fazeli, A. (2017) Investigating whether the presence of spermatozoa alters the secretion of extracellular vesicles by cultured porcine oviductal epithelial cells in an in vitro model of the female reproductive tract. UK Extracellular Vesicles Forum, Birmingham, UK.

4. Li, D., Secher, J. O. B., Juhl, M., Mashayekhi-Nezamabadi, K., Nielsen, T. T., Holst, B., Hyttel, P., Freude, K. and Hall, V. J (2017): Identification of SSEA-1 expressing enhanced reprogramming (SEER) cells in porcine embryonic fibroblasts. Cell Cycle, in press.

5. Zhang, Y., Schmid, B., Nikolaisen, N., Rasmussen, M.A., Aldana, B., Agger, M., Calloe, K., Stummann, T.C., Larsen, H.M., Nielsen, T.T., Huang, J., Xu, F., Liu, X., Bolund, L., Meyer, M., Bak, L.M., Waagepetersen, H., Luo, Y., Nielsen, J.E., The FReJA Consortium, Holst, B., Clausen, C., Hyttel, P., Freude, K.K. (2017): Patient iPSC-Derived Neurons for Disease Modeling of Frontotemporal Dementia with Mutation in CHMP2B. Stem Cell Rep. 8:648-658.

6. Tankov, S., Nomm M., Viil J., Eshaghi M., Jamaludin N., Thurston L. M., Koks S., Jaakma U. & Fazeli A. (2017) Characterisation of extracellular vesicles produced by early developing embryos. COST Action CA16119 CellFit Meeting, In vitro 3D total cell guidance and fitness, Albena, Bulgaria.

7. Thurston L. M., Holt W. V. & Fazeli A. R. (2017) Battle of the sexes: ‘How the selection of spermatozoa in the female reproductive tract manipulates the sex ratio of offspring’ in Legato MJ, ed., Principles of Gender-Specific Medicine, Third Edition, Elsevier.

8. Valleh, M.V., Zandi, N.K., Rasmussen, M.A. and Hyttel, P. (2017): Optimal doses of EGF and GDNF act as biological response modifiers to improve porcine oocyte maturation and quality. Zygote 11:1-11.

9. Welsford, G.E., Munk, R., Villagómez, D.A.F., Hyttel, P., King, W.A. and Revay, T. (2017): Androgen Insensitivity Syndrome in a Family of Warmblood Horses Caused by a 25-bp Deletion of the DNA-Binding Domain of the Androgen Receptor Gene. Sexual Dev.  DOI: 10.1159/000455114

10. Xiong, K., Zhou, Y., Blichfeld, K. A., Hyttel, P., Bolund, L., Freude, K. K. and Luo, Y. (2017): RNA-guided activation of pluripotency genes in human fibroblasts. Cellular Reprogramming 19:189-198.

 

2016

1. Akmal Jamaludin N., Witek K. J., Meikle A., Hunt S., Wachemig H., Thurston L. M., Andronowska A., Ebbens S. & Fazeli A. (2016) Characterisation of extracellular vesicles secreted by oviductal and endometrial epithelial cells. UK Extracellular Vesicles Forum, Oxford, UK.

2. Hansen, S. K., Borland, H., Hasholt, L. F., Tumer, Z., Nielsen, J. E., Rasmussen, M. A., Nielsen, T. T., Stummann, T. C., Fog, K. and  Hyttel, P. (2016): Generation of spinocerebellar ataxia type 3 patient-derived induced pluripotent stem cell line SCA3.A11. Stem Cell Res. 16:553-556.

3. Hansen, S. K., Borland, H., Hasholt, L. F., Tumer, Z., Nielsen, J. E., Rasmussen, M. A., Nielsen, T. T., Stummann, T. C., Fog, K. and  Hyttel, P. (2016): Generation of spinocerebellar ataxia type 3 patient-derived induced pluripotent stem cell line SCA3.B11. Stem Cell Res. 16:589-592.

4. Hansen, S.K., Stummann, T.C., Borland, H., Hasholt, L.F., Tümer, Z., Nielsen, J.E., Rasmussen, M.A., Nielsen, T.T., Daechsel, J.C.A., Fog, K. and Hyttel, P. (2016): Induced pluripotent stem cell - derived neurons for the study of spinocerebellar ataxia type 3. Stem Cell Res 17:306-317.

5. Li, T., Pires, C., Nielsen, T. T., Waldemar, G., Hjermind, L. E., Nielsen, J. E., Dinnyes, A., Hyttel, P. and Freude, K. K. (2016): Generation of induced pluripotent stem cells (iPSCs) from an Alzheimer's disease patient carrying an A79V mutation in PSEN1. Stem Cell Res. 16:229-32.

6. Li, T., Pires, C., Nielsen, T. T., Waldemar, G., Hjermind, L. E., Nielsen, J. E., Dinnyes, A., Holst, B., Hyttel, P. and Freude, K. K. (2016): Generation of induced pluripotent stem cells (iPSCs) from an Alzheimer's disease patient carrying a M146I mutation in PSEN1. Stem Cell Res. 16:334-7.

7. Macaulay, A. D., Gilbert, I., Scantland, S., Fournier, E., Ashkar, F., Bastien, A., Saadi, H. A. S., Gagné, D., Sirard, M-A., Khandjian, É. W., Richard, F. J., Hyttel, P. & Robert, C. (2016): Cumulus Cell Transcripts Transit to the Bovine Oocyte in Preparation for Maturation. Biol. Reprod. 94:11-27.

8. Marthaler, A. G., Schmid, B., Tubsuwan, A., Poulsen, U. B., Engelbrecht, A. F., Mau-Holzmann, U. A., Hyttel, P., Nielsen, J. E., Nielsen, T. T. and Holst, B. (2016): Generation of an isogenic, gene-corrected control cell line of the spinocerebellar ataxia type 2 patient-derived iPSC line H196. Stem Cell Res. 16:162-5.

9. Marthaler, A. G., Schmid, B., Tubsuwan, A., Poulsen, U. B., Hyttel, P., Nielsen, T. T., Nielsen, J. E. and Holst, B. (2016): Generation of spinocerebellar ataxia type 2 patient-derived iPSC line H266. Stem Cell Res. 16:166-9.

10. Marthaler, A. G., Schmid, B., Tubsuwan, A., Poulsen, U. B., Engelbrecht, A. F., Mau-Holzmann, U. A., Hyttel, P., Nielsen, J. E., Nielsen, T. T. & Holst, B. (2016): Generation of an isogenic, gene-corrected control cell line of the spinocerebellar ataxia type 2 patient-derived iPSC line H271. Stem Cell Res. 16:180-183.

11. Marthaler, A. G., Schmid, B., Tubsuwan, A., Poulsen, U. B., Hyttel, P., Nielsen, T. T., Nielsen, J. E. and Holst, B. (2016): Generation of spinocerebellar ataxia type 2 patient-derived iPSC line H196. Stem Cell Res. 16:199-201.

12. Marthaler, A. G., Tubsuwan, A., Schmid, B., Poulsen, U. B., Hyttel, P., Nielsen, J. E., Nielsen, T. T. and Holst, B. (2016): Generation of spinocerebellar ataxia type 2 patient-derived iPSC line H271. Stem Cell Res. 16:159-161.

13. Marthaler, A. G., Tubsuwan, A., Schmid, B., Poulsen, U. B., Engelbrecht, A. F., Mau-Holzmann, U. A., Hyttel, P., Nielsen, T. T., Nielsen, J. E. and Holst, B. (2016): Generation of an isogenic, gene-corrected control cell line of the spinocerebellar ataxia type 2 patient-derived iPSC line H266. Stem Cell Res. 16:202-5.

14. Nimsanor, N., Poulsen, U., Rasmussen, M. A., Clausen, C., Mau-Holzmann, U. A., Nielsen, J. E., Nielsen, T. T., Hyttel, P., Holst, B. and Schmid, B. (2016): Generation of an isogenic, gene-corrected iPSC line from a symptomatic 59-year-old female patient with frontotemporal dementia caused by an R406W mutation in the microtubule associated protein tau (MAPT) gene. Stem Cell Res. 17:576-579.

15. Nimsanor, N., Poulsen, U., Rasmussen, M. A., Clausen, C., Mau-Holzmann, U. A., Nielsen, J. E., Nielsen, T. T., Hyttel, P., Holst, B. and Schmid, B. (2016): Generation of an isogenic, gene-corrected iPSC line from a pre-symptomatic 28-year-old woman with an R406W mutation in the microtubule associated protein tau (MAPT) gene. Stem Cell Res. 17:600-602.

16. Pires, C., Schmid, B., Petræusa, C., Poon, A., Nimsanor, N., Nielsen, T.T., Waldemar, G., Hjermind, L.E., Nielsen, J.E., Hyttel, P., Freude, K.K. (2016): Generation of a gene-corrected isogenic control cell line from an Alzheimer's disease patient iPSC line carrying a A79V mutation in PSEN1. Stem Cell Res. 17:285-288.

17. Poon, A., Schmid, B., Pires, C., Nielsen, T.T., Hjermind, L.E., Nielsen, J.E., Holst, B., Hyttel, P., Freude, K.K. (2016): Generation of a gene-corrected isogenic control hiPSC line derived from a familial Alzheimer's disease patient carrying a L150P mutation in presenilin 1. Stem Cell Res. 17:466-469.

18. Rasmussen, M.A., Hjermind, L.A., Hasholt, L.F., Waldemar, G., Nielsen, J.E., Clausen, C., Hyttel, P. and Holst, B. (2016): Induced pl-uripotent stem cells (iPSCs) derived from a patient with frontotemporal dementia caused by a P301L mutation in microtubule-associated protein tau (MAPT). Stem Cell Res 16:70–74.

19. Rasmussen, M.A., Hjermind, L.A., Hasholt, L.F., Waldemar, G., Nielsen, J.E., Clausen, C., Hyttel, P. and Holst, B. (2016): Induced pluripotent stem cells (iPSCs) derived from a patient with frontotemporal dementia caused by a R406W mutation in microtubule-associated protein tau (MAPT). Stem Cell Res 16:75–78.

20. Rasmussen, M.A., Hjermind, L.A., Hasholt, L.F., Waldemar, G., Nielsen, J.E., Clausen, C., Hyttel, P. and Holst, B. (2016): Induced pluripotent stem cells (iPSCs) derived from a pre-symptomatic carrier of a R406W mutation in microtubule-associated protein tau (MAPT) causing frontotemporal dementia.  Stem Cell Res 16:105–109.

21. Secher, J.O., Callesen, H., Freude, K.K. and Hyttel, P. (2016): Initial embryology and pluripotent stem cells in the pig – the quest for establishing the pig as a model for cell therapy. Theriogenology 85:162-71.

22. Zhang, Y., Schmid, B., Nielsen, T.T., Nielsen, J.E., Clausen, C., Hyttel, P., Holst, B., Freude, K.K. (2016):  Generation of a human induced pluripotent stem cell line via CRISPR-Cas9 mediated integration of a site-specific homozygous mutation in CHMP2B.  Stem Cell Res. 17: 148-150.

23. Zhang, Y., Schmid, B., Nielsen, T.T., Nielsen, J.E., Clausen, C., Hyttel, P., Holst, B., Freude, K.K. (2016):  Generation of a human induced pluripotent stem cell line via CRISPR-Cas9 mediated integration of a site-specific homozygous mutation in CHMP2B.  Stem Cell Res. 17: 151–153.

24. Zhou, Y., Al-Saaidi, R.A., Guerra, P.F., Freude, K.K., Olsen, R.K.J., Jensen, U.B., Gregersen, N., Hyttel, P., Bolund, L., Aagaard, L., Bross, P. and Luo, Y. (2016): Mitochondrial Spare Respiratory Capacity Is Negatively Correlated With Nuclear Reprogramming Efficiency. Stem Cells and Dev. 26:166-176. 

25. Zhou, S., Ochalek, A., Szczesna, K., Avci, H. X., Kobolak, J., Varga, E., Rasmussen, M., Hoist, B., Cirera, S., Hyttel, P., Freude, K. K. and Dinnyes, A. (2016): The positional identity of iPSC-derived neural progenitor cells along the anterior-posterior axis is controlled in a dosage-dependent manner by bFGF and EGF. Differentiation 92:183-194. 

26. Zhou, S., Szczesna, K., Ochalek, A., Kobolák, J., Varga, E., Nemes, C., Chandrasekaran, A., Rasmussen, M., Cirera, S., Hyttel, P., Dinnyés, A., Freude, K. and Avci, H.K. (2016): Neurosphere based differentiation
of human iPSC improves astrocyte differentiation. Stem Cells Int. rnational, Volume 2016, Article ID 4937689, 15 pages, http://dx.doi.org/10.1155/2016/4937689.

27. Tubsuwan, A., Pires, C., Rasmussen, M.A., Schmid, B., Nielsen, J.E., Hjermind, L.E., Hall, V., Nielsen, T.T., Waldemar, G., Hyttel, P., Clausen, C., Kitiyanant, N., Freude, K.K. and Holst, B. (2016): Generation of induced pluripotent stem cells (iPSCs) from an Alzheimer's disease patient carrying a L150P mutation in PSEN-1. Stem Cell Res 16:110–112.

28. Valleh, M.V., Rasmussen, M.A. and Hyttel, P. (2016): Combination effects of epidermal growth factor and glial cell line-derived neurotrophic factor on the in vitro developmental potential of porcine oocytes. Zygote. 24:465-76.

29. Xiong, K., Zhou, Y., Hyttel, P., Bolund, L., Freude, K.K. and Luo, Y. (2016): Generation of Induced pluripotent stem cells (iPSCs) stably expressing CRISPR-based synergistic activation mediator (SAM).  Stem Cell Res. 17:665-669.

​

 

​